Ined with the following Abs: anti D3-PerCP (1:50, final dilution, BD Biosciences, San Jose, CA) and fixed with 1 formaldehyde for 209. Subsequently cells were permeabilized with 0.5 saponin in 1 BSA FACS buffer and stained with the following Abs: anti FN-c E (1:50, final dilution; BD Biosciences), anti L-17A PC (1:50, final dilution, eBioscience), anti-IL-4allophycocyanin (1:50 final dilution, Biolegend, San Diego, CA), anti-IL-21-PE(1:50, final dilution, eBioscience). Appropriate isotype-matched controls from BD Biosciences were included in all of the experiments. Cells were analysed using a FACSCalibur cytometer and Cell-QuestPro software.ImmunofluorescenceFrozen sections of mucosal samples were stained with monoclonal mouse anti-human CD3 (1:100 final dilution; Santa Cruz Biotechnology, DBA, Milan, Italy) and monoclonal mouse antihuman CD68 (1:200 final dilution; Dako, Glostrup, Denmark) followed by incubation with a highly sensitive biotinylated secondary Ab (Dako) and a Tyramide Signal Amplification Kit (PerkinElmer, Waltham, MA). CD3-positive cells and CD68positive cells were counted and expressed as numbers of cells6high power field and 5 high power fields were subsequently counted in each slide.Total Protein Extraction and Enzyme-linked Immunosorbent Assay (ELISA)Intestinal mucosal samples were lysed on ice 
in buffer containing 10 mM HEPES (pH 7.9), 10 mM KCl, 0.1 mM EDTA, 0.2 mM EGTA, and 0.5 Nonidet P40, supplemented with 1 mM dithiothreitol, 10 mg ml?aprotinin, 10 mg ml? leupeptin, 1 mM phenyl-methylsulfonyl fluoride, 1 mM Na3VO4, and 1 mM NaF. Lysates were clarified by centrifugation at 12,000 g for 30 min at 4uC. Extracts were analysed for IL-12 content using sensitive commercial ELISA kits (R D Systems, Minneapolis, MN) according to the manufacturer’s instructions.Lamina Propria Mononuclear Cell IsolationAll reagents were from Sigma-Aldrich (Milan, Italy) unless specified. Lamina propria mononuclear cells (LPMC) were isolated from ileal biopsies and intestinal resection specimens of CD patients and 1485-00-3 price normal controls as described elsewhere. [5] LPMC were suspended in RPMI 1640 medium, supplemented with 10 inactivated fetal bovine serum (FBS), penicillin (P) (100 U/ml), and streptomycin (S) (100 mg/ml) (Life TechnologiesGibcoCRL, Milan, Italy). LPMC were used to assess cytokine expression by flow cytometry.Statistical AnalysisStatistical differences were assessed with the GraphPad Prism statistical PC program (GraphPad Software, San Diego, CA). Comparisons were made between each CD subgroup and normal controls, and in CD group between early and established 3-Bromopyruvic acid chemical information lesions using the Mann-Whitney U test (for cytokine expression) and the Student t-test (for CD3- and CD68-infiltrates). A p value of less than 0.05 was considered statistically significant.RNA Extraction, cDNA Preparation, and Real-time PCRRNA was extracted from fresh mucosal samples of CD patients and normal controls using Trizol reagent according to the manufacturer’s instructions (Invitrogen, Carlsbad, CA). A constant amount of RNA (1 mg per sample) was reverse-transcribed into cDNA, and this was amplified using a sybergreen-based PCR (BioRad, Hercules, CA). PCR conditions were as follows: denaturation 1 min at 95uC, annealing 
30 s at 61uC for IL-17A and IL-6; 58uC for IFN-c, IL-21, IL-13 and IL-23p19; 62uC for TNF-a and IL-5, and 60uC for b-actin followed by 30 s extension at 72uC. PrimerResults Clinical and Endoscopic DataNo endoscopic recurrence was documented in.Ined with the following Abs: anti D3-PerCP (1:50, final dilution, BD Biosciences, San Jose, CA) and fixed with 1 formaldehyde for 209. Subsequently cells were permeabilized with 0.5 saponin in 1 BSA FACS buffer and stained with the following Abs: anti FN-c E (1:50, final dilution; BD Biosciences), anti L-17A PC (1:50, final dilution, eBioscience), anti-IL-4allophycocyanin (1:50 final dilution, Biolegend, San Diego, CA), anti-IL-21-PE(1:50, final dilution, eBioscience). Appropriate isotype-matched controls from BD Biosciences were included in all of the experiments. Cells were analysed using a FACSCalibur cytometer and Cell-QuestPro software.ImmunofluorescenceFrozen sections of mucosal samples were stained with monoclonal mouse anti-human CD3 (1:100 final dilution; Santa Cruz Biotechnology, DBA, Milan, Italy) and monoclonal mouse antihuman CD68 (1:200 final dilution; Dako, Glostrup, Denmark) followed by incubation with a highly sensitive biotinylated secondary Ab (Dako) and a Tyramide Signal Amplification Kit (PerkinElmer, Waltham, MA). CD3-positive cells and CD68positive cells were counted and expressed as numbers of cells6high power field and 5 high power fields were subsequently counted in each slide.Total Protein Extraction and Enzyme-linked Immunosorbent Assay (ELISA)Intestinal mucosal samples were lysed on ice in buffer containing 10 mM HEPES (pH 7.9), 10 mM KCl, 0.1 mM EDTA, 0.2 mM EGTA, and 0.5 Nonidet P40, supplemented with 1 mM dithiothreitol, 10 mg ml?aprotinin, 10 mg ml? leupeptin, 1 mM phenyl-methylsulfonyl fluoride, 1 mM Na3VO4, and 1 mM NaF. Lysates were clarified by centrifugation at 12,000 g for 30 min at 4uC. Extracts were analysed for IL-12 content using sensitive commercial ELISA kits (R D Systems, Minneapolis, MN) according to the manufacturer’s instructions.Lamina Propria Mononuclear Cell IsolationAll reagents were from Sigma-Aldrich (Milan, Italy) unless specified. Lamina propria mononuclear cells (LPMC) were isolated from ileal biopsies and intestinal resection specimens of CD patients and normal controls as described elsewhere. [5] LPMC were suspended in RPMI 1640 medium, supplemented with 10 inactivated fetal bovine serum (FBS), penicillin (P) (100 U/ml), and streptomycin (S) (100 mg/ml) (Life TechnologiesGibcoCRL, Milan, Italy). LPMC were used to assess cytokine expression by flow cytometry.Statistical AnalysisStatistical differences were assessed with the GraphPad Prism statistical PC program (GraphPad Software, San Diego, CA). Comparisons were made between each CD subgroup and normal controls, and in CD group between early and established lesions using the Mann-Whitney U test (for cytokine expression) and the Student t-test (for CD3- and CD68-infiltrates). A p value of less than 0.05 was considered statistically significant.RNA Extraction, cDNA Preparation, and Real-time PCRRNA was extracted from fresh mucosal samples of CD patients and normal controls using Trizol reagent according to the manufacturer’s instructions (Invitrogen, Carlsbad, CA). A constant amount of RNA (1 mg per sample) was reverse-transcribed into cDNA, and this was amplified using a sybergreen-based PCR (BioRad, Hercules, CA). PCR conditions were as follows: denaturation 1 min at 95uC, annealing 30 s at 61uC for IL-17A and IL-6; 58uC for IFN-c, IL-21, IL-13 and IL-23p19; 62uC for TNF-a and IL-5, and 60uC for b-actin followed by 30 s extension at 72uC. PrimerResults Clinical and Endoscopic DataNo endoscopic recurrence was documented in.
